Some Insights into Data Weighting in Integrated Stock Assessments

Dr. André Punt1
1US SAFS
October 13, 2015 9:00 (PST): FSH 203

Some Insights into Data Weighting in Integrated Stock Assessments

The results of fishery stock assessments based on the integrated analysis paradigm can be sensitive to the values for the factors used to weight each of the data types included in the objective function minimized to obtain the estimates of parameters. These assessments generally include index data, length-composition information and conditional age-at-length data, and algorithms have been developed to select weighting factors for each of these data types. This paper introduces methods for weighting conditional age-at-length data that extend an approach developed by Francis (2011) to weight age- and length-composition data. Simulation based on single-zone and two-zone operating models are used to compare five tuning algorithms that are constructed as combinations of methods to weight each of these data types. The single-zone operating models allow evaluation of the algorithms in terms of the ability to provide unbiased estimates of management-related quantities and the correct data weights in the absence of model mis-specification while the two-zone operating models allow the impacts of model mis-specification on the performance of tuning algorithms to be explored.

Presentation

Autocorrelated recrutiment deviations

Dr. Elizabeth Councill1,2
1NWFSC
2US SAFS
September 29, 2015 9:00 (PST): FSH 203

Autocorrelated recrutiment deviations

Abstract: To be posted …

Johnson earns NOAA/Sea Grant Population Dynamics Fellowship

Kelli Johnson, a current PhD student in the Punt lab, was recently awarded a three year NOAA/Sea Grant Population Dynamics Fellowship. The fellowship encourages applicants to pursue careers in either population and ecosystem dynamics and stock assessment or in marine resource economics. To facilitate learning about ecosystem dynamics, Kelli will work with Dr. Isaac Kaplan of the Northwest Fisheries Science Center on ecosystem indicators using output from Atlantis. Kelli falls in the footsteps of many previous Punt Lab students who also received Population Dynamics Fellowships.

Punt lab produces best available science

Thanks to efforts by the Northwest Fisheries Science Center (NWFSC) to train the next generation of stock assessment scientists, four members of the Punt lab had their work accepted as the best available science by the Pacific Fisheries Management Council. Caitlin Allen Axelrud (Punt), Felipe Hurtado-Ferro (Punt), Peter Kuriyama (Branch), Kelli Johnson (Punt), Qi Lee (Punt), Maite Pons (Hilborn), Merrill Rudd (Branch/Hilborn), Christine Stawitz (Essington), and John Trochta (Branch) spent much of the last academic year preparing stock assessment updates for petrale and sablefish. Their work was accepted as the best available science at the June 2015 management council meeting. Throughout the process they were mentored by Dr. Owen Hamel and Dr. Melissa Haltuch of the NWFSC.

Harvest strategies for multispecies fisheries under catch constraints

Dr. Kotaro Ono1
1UW SAFS

June 02, 2015 9:00 (PST): FSH 203

Harvest strategies for multispecies fisheries under catch constraints

Current groundfish species in the Bering Sea, Alaska, are managed under strict annual quotas. However, there are strong bycatch regulations in place that compromise the ability of the fleet to catch the entire quota. As a consequence, single species population forecasting might not be very accurate if the multispecies nature of the fishery is ignored. In addition, uncertainty in environmental fluctuation and fishermen behavior can affect the accuracy of population forecasting and bias the effect of management actions. Management strategy evaluation (MSE) is a computer simulation method that consists in modelling both the fish population and the management cycle (stock assessment and decision making) of a fishery to evaluate the performance of the management actions. This procedure has been shown to be very important as it can caution the user about the potential undesired effect of their proposed management actions (e.g. unwanted reduction in quotas). In this study, a MSE was developed to test 1) how the inclusion of a multispecies catch tradeoff affect the short- to long-term performance of the model (e.g. catches, discounted revenue) compared to traditional single species model, and 2) how these models perform in the presence of environmental and fishermen behavioral uncertainty.

Moving beyond the ‘best assessment’ paradigm

Ian Stewart1
1International Pacific Halibut Commission

May 05, 2015 9:00 (PST): FSH 203

It is standard practice to conduct fisheries stock assessments generating a point estimate of stock size, which is then translated into one or more future fishery catch targets and limits. The general approach often relies on the output of a single stock assessment model, and therefore does not thoroughly account for alternative hypotheses or major sources of uncertainty such as fixed parameter values, model approach (e.g., statistical catch-at-age, VPA), model structure (e.g., treatment of spatial dynamics, delineation of fishing fleets, time-series length) and data weighting. In 2012, the International Pacific Halibut Commission made the transition from point estimates to risk-assessment, based on a decision table produced for the annual management process. The decision table represents a composite of probability-weighted results from alternative models, allowing a comparison of potential benefits (fishery yields) with the probabilities of various risk metrics, including stock and fishery trends and status. In 2013, the approach was extended to include the use of an ‘ensemble’ of models, following methods used in climate and hurricane forecasting. These changes have led to increased transparency about perceived risk, the availability of more information for the decision makers, and a clear delineation between scientific and policy considerations. The ensemble approach to stock assessment also provides a conceptual link between single model analyses and fully developed Management Strategy Evaluation of harvest policy and management procedures. Potential extensions and improvements to the approach, as well as a brief summary of decisions based on this information will also be discussed.

A proposal for rehabilitating the multinomial likelihood for compositional data

Dave Fournier1, James Ianelli1,2 and Steve Martell1,3
1ADMB Foundation; 2Alaska Fisheries Science Center; 3International Pacific Halibut Commission

April 21, 2015 9:00 (PST): FSH 203

A proposal for rehabilitating the multinomial likelihood for compositional data

The multinomial likelihood is widely used in many stock assessment models for evaluating compositional data. However, this simple model does not account for over-dispersion and does not allow for correlation among adjacent categories. In response to recent publications proposing alternatives for the multinomial, we propose to extend and modify the ideas put forward by Hranfnkelsson and Stefánsson (2004) to better accommodate over-dispersion and correlation in compositional data. Specifically, to develop a self-scaling multinomial type estimation procedure and optionally incorporate positively autocorrelated errors. Models that incorporate composition data need to take into account over-dispersion and correlation if uncertainty in model parameters, and the risks associated with management actions, is desired.

Carey McGilliard wins CJFAS Editors’ Choice

Congratulations to Carey McGilliard, a former Punt lab postdoctoral researcher, and her most recent accomplishment of Canadian Journal of Aquatic and Fishery Sciences Editor’s Choice Award for February.

Accounting for marine reserves using spatial stock assessments

Carey R. McGilliard, André E. Punt, Richard D. Methot Jr., Ray Hilborn

When marine reserves are implemented, increases in fish abundance and percentage of older fish are expected in the reserve. Assessments of the status of marine fish stocks typically represent the stock throughout its range and do not account for the spatial pattern caused by marine reserves, which may lead to incorrect estimates of overall population status. Simulation modeling is used to analyze the ability of assessments to estimate population status after the implementation of a marine reserve. Assessment methods that explicitly accounted for a marine reserve and fish movement patterns yielded the most accurate and precise estimates of population status.